Download Xcms For Mac

  четверг 27 февраля
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Problem with installation of metaXCMS on MAC. Please install GTK+ 3. Download metaXCMS source package (metaXCMS0.1.19.tar.gz) at. Instructions for preparing for the use of XCMS on your laptop. We expect that. (Mac users) Double click on the R-latest.pkg file in Downloads i. This launches.

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DOI: 10.18129/B9.bioc.xcms

LC-MS and GC-MS Data Analysis

Bioconductor version: Release (3.10)

Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.

Download ssms for mac

Author: Colin A. Smith <csmith at scripps.edu>, Ralf Tautenhahn <rtautenh at gmail.com>, Steffen Neumann <sneumann at ipb-halle.de>, Paul Benton <hpbenton at scripps.edu>, Christopher Conley <cjconley at ucdavis.edu>, Johannes Rainer <Johannes.Rainer at eurac.edu>, Michael Witting <michael.witting at helmholtz-muenchen.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation('xcms')):

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Installation

To install this package, start R (version '3.6') and enter:

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

HTMLR ScriptGrouping FTICR-MS data with xcms
HTMLR ScriptLC-MS/MS data analysis with xcms
HTMLR ScriptLCMS data preprocessing and analysis with xcms
HTMLR ScriptNew and modified functionality in xcms
PDFReference Manual
TextNEWS
TextLICENSE

Details

biocViewsImmunoOncology, MassSpectrometry, Metabolomics, Software
Version3.8.2
In Bioconductor sinceBioC 1.6 (R-2.1) or earlier (> 15 years)
LicenseGPL (>= 2) + file LICENSE
DependsR (>= 2.14.0), methods, Biobase, BiocParallel(>= 1.8.0), MSnbase(>= 2.9.3)
ImportsmzR(>= 2.19.5), BiocGenerics, ProtGenerics(>= 1.17.2), lattice, RColorBrewer, plyr, RANN, multtest, MassSpecWavelet(>= 1.5.2), S4Vectors, robustbase, IRanges
LinkingTo
SuggestsBiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata(>= 0.25.1), ncdf4, rgl, microbenchmark, testthat, pander, magrittr, MALDIquant, pheatmap
SystemRequirements
EnhancesRgraphviz, Rmpi, XML
URLhttps://github.com/sneumann/xcms
BugReportshttps://github.com/sneumann/xcms/issues/new
Depends On MeCAMERA, faahKO, flagme, IPO, LOBSTAHS, Metab, metaMS, ncGTW, proFIA, PtH2O2lipids
Imports MeCAMERA, cliqueMS, cosmiq, MAIT, Risa
Suggests MeCluMSID, MassSpecWavelet, msdata, msPurity, mtbls2, RforProteomics, RMassBank
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package xcms_3.8.2.tar.gz
Windows Binary xcms_3.8.2.zip
Mac OS X 10.11 (El Capitan) xcms_3.8.2.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/xcms
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/xcms
Package Short Urlhttps://bioconductor.org/packages/xcms/
Package Downloads ReportDownload Stats
Old Source Packages for BioC 3.10Source Archive